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Showing all 37 items for (author: stoddard & d)

EMDB-40260:
CryoEM map of a de novo designed T=4 icosahedral nanocage hierarchically built from pseudosymmetric trimers; design Ico(T=4)-4
Method: single particle / : Borst AJ, Kibler RD, Lee S

EMDB-40267:
CryoEM map of a T=1 off-target state of design Ico(T=4)-4
Method: single particle / : Borst AJ, Kibler RD, Lee S

EMDB-40268:
CryoEM map of a de novo designed T=4 octahedral nanocage hierarchically built from pseudosymmetric trimers; design Oct(T=4)-3
Method: single particle / : Philomin A, Borst AJ, Kibler RD

EMDB-40269:
CryoEM map of a T=1 off-target state of design Oct(T=4)-3
Method: single particle / : Philomin A, Borst AJ

EMDB-40208:
Backbone model of de novo-designed chlorophyll-binding nanocage O32-15
Method: single particle / : Redler RL, Ennist NM, Wang S, Baker D, Ekiert DC, Bhabha G

EMDB-40209:
Chlorophyll-binding region of de novo-designed nanocage O32-15
Method: single particle / : Redler RL, Ennist NM, Wang S, Baker D, Ekiert DC, Bhabha G

EMDB-28534:
Type IIS Restriction Endonuclease PaqCI, DNA bound
Method: single particle / : Kennedy MA, Stoddard BL

PDB-8epx:
Type IIS Restriction Endonuclease PaqCI, DNA bound
Method: single particle / : Kennedy MA, Stoddard BL

EMDB-28244:
CryoEM characterization of BrxL -- a unique AAA+ phage restriction Factor.
Method: single particle / : Shen BW, Stoddard BL

EMDB-28248:
CryoEM characterization of a unique AAA+ BrxL phage restriction factor
Method: single particle / : Shen BW, Stoddard BL

PDB-8emc:
CryoEM characterization of BrxL -- a unique AAA+ phage restriction Factor.
Method: single particle / : Shen BW, Stoddard BL

PDB-8emh:
CryoEM characterization of a unique AAA+ BrxL phage restriction factor
Method: single particle / : Shen BW, Stoddard BL

EMDB-29052:
SARS-CoV-2 Spike Hexapro - C68.59 Fab (Class 3 - disordered)
Method: single particle / : Croft JT, Lee KK

EMDB-29053:
SARS-CoV-2 Spike Hexapro - C59.68 Fab (Class 1 - No Fab bound)
Method: single particle / : Croft JT, Lee KK

EMDB-29054:
SARS-CoV-2 Spike Hexapro - C68.59 Fab (Class 2 - Fab bound)
Method: single particle / : Croft JT, Lee KK

EMDB-24425:
Circular tandem repeat protein with novel repeat topology and enhanced subunit contact surfaces
Method: single particle / : Shen BW, Stoddard BL

PDB-7rdr:
Circular tandem repeat protein with novel repeat topology and enhanced subunit contact surfaces
Method: single particle / : Shen BW, Stoddard BL

EMDB-22712:
Subtomogram average of flagellar axoneme doublet from the wild type Tetrahymena thermophila
Method: subtomogram averaging / : Fabritius AS, Bayless BA, Li S, Stoddard D, Heydeck W, Ebmeier CC, Anderson L, Gunnels T, Nachiappan C, Whitall J, Old W, Agard DA, Nicastro D, Winey M

EMDB-22713:
Subtomogram average of flagellar axoneme doublet from the Tetrahymena thermophila Fap115 knockout mutant
Method: subtomogram averaging / : Fabritius AS, Bayless BA, Li S, Stoddard D, Heydeck W, Ebmeier CC, Anderson L, Gunnels T, Nachiappan C, Whitall J, Old W, Agard DA, Nicastro D, Winey M

EMDB-23461:
cryoEM structure DrdV-DNA complex
Method: single particle / : Shen BW, Stoddard BL

EMDB-23543:
cryoEM structure DrdV-DNA complex
Method: single particle / : Shen BW, Stoddard BL

PDB-7lo5:
cryoEM structure DrdV-DNA complex
Method: single particle / : Shen BW, Stoddard BL

PDB-7lvv:
cryoEM structure DrdV-DNA complex
Method: single particle / : Shen BW, Stoddard BL

EMDB-21955:
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Upright conformation
Method: single particle / : Herrmann T, Harrison SC, Jenni S

EMDB-21956:
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Intermediate conformation
Method: single particle / : Herrmann T, Harrison SC, Jenni S

EMDB-21957:
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Reversed conformation
Method: single particle / : Herrmann T, Harrison SC, Jenni S

PDB-6wxe:
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Upright conformation
Method: single particle / : Herrmann T, Harrison SC, Jenni S

PDB-6wxf:
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Intermediate conformation
Method: single particle / : Herrmann T, Harrison SC, Jenni S

PDB-6wxg:
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Reversed conformation
Method: single particle / : Herrmann T, Harrison SC, Jenni S

EMDB-20309:
cryoEM structure of yeast glucokinase filament
Method: helical / : Lynch EM, Dosey AM, Farrell DP, Stoddard PR, Kollman JM

PDB-6pdt:
cryoEM structure of yeast glucokinase filament
Method: helical / : Lynch EM, Dosey AM, Farrell DP, Stoddard PR, Kollman JM

EMDB-9127:
A nucleosome bridging mechanism for activation of a maintenance DNA methyltransferase
Method: single particle / : Stoddard CI, Feng S, Campbell MG, Liu W, Wang H, Zhong X, Bernatavichute Y, Cheng Y, Jacobsen SE, Narlikar GJ

EMDB-7805:
Subtomogram average (699 axonemal repeats) of isolated Rib72A/B double knock out Tetrahymena cilia showing the lumen of the ciliary doublet microtubule (DMT)
Method: subtomogram averaging / : Stoddard D, Zhao Y, Bayless B, Gui L, Louka P, Dave D, Surwayanshi S, Tomasi R, Dupuis-Williams P, Baroud C, Gaertig J, Winey M, Nicastro D

EMDB-7806:
Subtomogram average (758 axonemal repeats) of isolated Rib72A knock out Tetrahymena cilia showing the lumen of the ciliary doublet microtubule (DMT)
Method: subtomogram averaging / : Stoddard D, Zhao Y, Bayless B, Gui L, Louka P, Dave D, Surwayanshi S, Tomasi R, Dupuis-Williams P, Baroud C, Gaertig J, Winey M, Nicastro D

EMDB-7807:
Subtomogram average (735 axonemal repeats) of isolated Rib72B knock out Tetrahymena cilia Rescued with Rib72B-GFP, showing the lumen of the ciliary doublet microtubule (DMT)
Method: subtomogram averaging / : Stoddard D, Zhao Y, Bayless B, Gui L, Louka P, Dave D, Surwayanshi S, Tomasi R, Dupuis-Williams P, Baroud C, Gaertig J, Winey M, Nicastro D

EMDB-7811:
Subtomogram average (702 axonemal repeats) of isolated Rib72B knock out Tetrahymena cilia showing the lumen of the ciliary doublet microtubule (DMT)
Method: subtomogram averaging / : Stoddard D, Zhao Y, Bayless B, Gui L, Louka P, Dave D, Surwayanshi S, Tomasi R, Dupuis-Williams P, Baroud C, Gaertig J, Winey M, Nicastro D

EMDB-8696:
Regulation of Rvb1/Rvb2 by a domain within the INO80 chromatin remodeling complex implicates the yeast Rvbs as protein assembly chaperones
Method: single particle / : Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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